[ Source: bitseq ]
Package: bitseq (0.7.5+dfsg-5build1)
Links for bitseq
Trisquel Resources:
Download Source Package bitseq:
- [bitseq_0.7.5+dfsg-5build1.dsc]
- [bitseq_0.7.5+dfsg.orig.tar.xz]
- [bitseq_0.7.5+dfsg-5build1.debian.tar.xz]
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Tim Booth
- Andreas Tille
External Resources:
- Homepage [github.com]
Similar packages:
Bayesian Inference of Transcripts from Sequencing Data
BitSeq is an application for inferring expression levels of individual transcripts from sequencing (RNA-Seq) data and estimating differential expression (DE) between conditions. An advantage of this approach is the ability to account for both technical uncertainty and intrinsic biological variance in order to avoid false DE calls. The technical contribution to the uncertainty comes both from finite read-depth and the possibly ambiguous mapping of reads to multiple transcripts.
Other Packages Related to bitseq
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- dep: libc6 (>= 2.29)
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
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- dep: libgcc-s1 (>= 3.0) [amd64]
- GCC support library
- dep: libgcc-s1 (>= 3.5) [armhf]
-
- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) support library
-
- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-numpy
- Fast array facility to the Python 3 language
-
- dep: zlib1g (>= 1:1.2.3.3)
- compression library - runtime
-
- sug: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
Download bitseq
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| amd64 | 341.1 kB | 1903 kB | [list of files] |
| armhf | 289.2 kB | 1106 kB | [list of files] |