[ nabia ]
[ aramo ]
[ Source: biobambam2 ]
Package: biobambam2 (2.0.95-1)
Links for biobambam2
Trisquel Resources:
Download Source Package biobambam2:
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Andreas Tille
External Resources:
- Homepage [gitlab.com]
Similar packages:
tools for early stage alignment file processing
This package contains some tools for processing BAM files including
bamsormadup: parallel sorting and duplicate marking bamcollate2: reads BAM and writes BAM reordered such that alignment or collated by query name bammarkduplicates: reads BAM and writes BAM with duplicate alignments marked using the BAM flags field bammaskflags: reads BAM and writes BAM while masking (removing) bits from the flags column bamrecompress: reads BAM and writes BAM with a defined compression setting. This tool is capable of multi-threading. bamsort: reads BAM and writes BAM resorted by coordinates or query name bamtofastq: reads BAM and writes FastQ; output can be collated or uncollated by query name
Other Packages Related to biobambam2
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- dep: libc6 (>= 2.29)
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
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- dep: libgcc1 (>= 1:3.4) [amd64]
- GCC support library (dependency package)
- dep: libgcc1 (>= 1:3.5) [armhf]
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- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) support library
-
- dep: libmaus2-2 (>= 2.0.611)
- collection of data structures and algorithms for biobambam
-
- dep: libstdc++6 (>= 9)
- GNU Standard C++ Library v3
Download biobambam2
Architecture | Package Size | Installed Size | Files |
---|---|---|---|
amd64 | 6,258.5 kB | 44566 kB | [list of files] |
armhf | 5,452.2 kB | 31661 kB | [list of files] |