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Package: ariba (2.14.4+ds-2build1)

Antibiotic Resistance Identification By Assembly

ARIBA is a tool that identifies antibiotic resistance genes by running local assemblies. The input is a FASTA file of reference genes and paired sequencing reads. ARIBA reports which of the reference genes were found, plus detailed information on the quality of the assemblies and any variants between the sequencing reads and the reference genes.

Other Packages Related to ariba

  • depends
  • recommends
  • suggests
  • dep: bowtie2 (>= 2.1.0)
    ultrafast memory-efficient short read aligner
  • dep: cd-hit
    suite of programs designed to quickly group sequences
  • dep: fastaq (>= 3.12.0)
    FASTA and FASTQ file manipulation tools
  • dep: libc6 (>= 2.14)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libfml0 (>= 0.1-4~)
    library for assembling Illumina short reads in small regions
  • dep: libgcc1 (>= 1:3.0)
    GCC support library (dependency package)
  • dep: libminimap0
    library for approximate mapping of long biosequences
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3
  • dep: mash
    fast genome and metagenome distance estimation using MinHash
  • dep: mummer
    Efficient sequence alignment of full genomes
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
    dep: python3 (<< 3.9)
    dep: python3 (>= 3.8~)
  • dep: python3-biopython
    Python3 library for bioinformatics
  • dep: python3-bs4
    error-tolerant HTML parser for Python 3
  • dep: python3-dendropy
    DendroPy Phylogenetic Computing Library (Python 3)
  • dep: python3-matplotlib
    Python based plotting system in a style similar to Matlab (Python 3)
  • dep: python3-pymummer (>= 0.10.2)
    Python 3 interface to MUMmer
  • dep: python3-pysam (>= 0.9.1)
    interface for the SAM/BAM sequence alignment and mapping format (Python 3)
  • dep: python3-tk
    Tkinter - Writing Tk applications with Python 3.x
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime

Download ariba

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Architecture Package Size Installed Size Files
amd64 1,898.5 kB20454 kB [list of files]