[ ソース: pbsuite ]
パッケージ: pbhoney (15.8.24+dfsg-4)
pbhoney に関するリンク
Trisquel の資源:
pbsuite ソースパッケージをダウンロード:
- [pbsuite_15.8.24+dfsg-4.dsc]
- [pbsuite_15.8.24+dfsg.orig.tar.xz]
- [pbsuite_15.8.24+dfsg-4.debian.tar.xz]
メンテナ:
Original Maintainers:
- Debian Med Packaging Team (メールアーカイブ)
- Olivier Sallou
外部の資源:
- ホームページ [sourceforge.net]
類似のパッケージ:
genomic structural variation discovery
PBHoney is an implementation of two variant-identification approaches designed to exploit the high mappability of long reads (i.e., greater than 10,000 bp). PBHoney considers both intra-read discordance and soft-clipped tails of long reads to identify structural variants.
PBHoney is part of the PBSuite.
その他の pbhoney 関連パッケージ
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- dep: blasr (>= 5.3)
- mapping single-molecule sequencing reads
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
-
- dep: python3-h5py
- general-purpose Python interface to hdf5 (Python 3)
-
- dep: python3-intervaltree-bio
- Interval tree convenience classes for genomic data -- Python 3 library
-
- dep: python3-networkx
- tool to create, manipulate and study complex networks (Python3)
-
- dep: python3-numpy
- Fast array facility to the Python 3 language
-
- dep: python3-pbbanana (= 15.8.24+dfsg-4)
- additional utilities for the pbsuite
-
- dep: python3-pbsuite-utils (= 15.8.24+dfsg-4)
- software for Pacific Biosciences sequencing data -- Python utilities
-
- dep: python3-pysam (>= 0.8.0)
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
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- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- rec: pbdagcon
- sequence consensus using directed acyclic graphs