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パッケージ: r-bioc-tximport (1.14.0+dfsg-2)

transcript-level estimates for biological sequencing

Imports transcript-level abundance, estimated counts and transcript lengths, and summarizes into matrices for use with downstream gene-level analysis packages. Average transcript length, weighted by sample-specific transcript abundance estimates, is provided as a matrix which can be used as an offset for different expression of gene-level counts.

その他の r-bioc-tximport 関連パッケージ

  • 依存
  • 推奨
  • 提案
  • sug: r-bioc-deseq2 (>= 1.11.6)
    R package for RNA-Seq Differential Expression Analysis
  • sug: r-bioc-limma
    linear models for microarray data
  • sug: r-bioc-rhdf5
    BioConductor HDF5 interface to R
  • sug: r-cran-jsonlite
    Robust, High Performance JSON Parser and Generator for R
  • sug: r-cran-knitr
    GNU R package for dynamic report generation using Literate Programming
  • sug: r-cran-matrix
    GNU R package of classes for dense and sparse matrices
  • sug: r-cran-matrixstats
    GNU R methods that apply to rows and columns of a matrix
  • sug: r-cran-readr (>= 0.2.2)
    GNU R package to read rectangular text data
  • sug: r-cran-rmarkdown
    convert R markdown documents into a variety of formats
  • sug: r-cran-testthat
    GNU R testsuite

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