[ ソース: picard-tools ]
パッケージ: picard-tools (2.26.10+dfsg-1)
picard-tools に関するリンク
Trisquel の資源:
picard-tools ソースパッケージをダウンロード:
- [picard-tools_2.26.10+dfsg-1.dsc]
- [picard-tools_2.26.10+dfsg.orig.tar.xz]
- [picard-tools_2.26.10+dfsg-1.debian.tar.xz]
メンテナ:
Original Maintainers:
- Debian Med Packaging Team (メールアーカイブ)
- Charles Plessy
- Olivier Sallou
- Vincent Danjean
- Andreas Tille
- Steffen Moeller
- Pierre Gruet
外部の資源:
- ホームページ [broadinstitute.github.io]
類似のパッケージ:
Command line tools to manipulate SAM and BAM files
SAM (Sequence Alignment/Map) format is a generic format for storing large nucleotide sequence alignments. Picard Tools includes these utilities to manipulate SAM and BAM files:
AddCommentsToBam FifoBuffer AddOrReplaceReadGroups FilterSamReads BaitDesigner FilterVcf BamIndexStats FixMateInformation BamToBfq GatherBamFiles BedToIntervalList GatherVcfs BuildBamIndex GenotypeConcordance CalculateHsMetrics IlluminaBasecallsToFastq CalculateReadGroupChecksum IlluminaBasecallsToSam CheckIlluminaDirectory LiftOverIntervalList CheckTerminatorBlock LiftoverVcf CleanSam MakeSitesOnlyVcf CollectAlignmentSummaryMetrics MarkDuplicates CollectBaseDistributionByCycle MarkDuplicatesWithMateCigar CollectGcBiasMetrics MarkIlluminaAdapters CollectHiSeqXPfFailMetrics MeanQualityByCycle CollectIlluminaBasecallingMetrics MergeBamAlignment CollectIlluminaLaneMetrics MergeSamFiles CollectInsertSizeMetrics MergeVcfs CollectJumpingLibraryMetrics NormalizeFasta CollectMultipleMetrics PositionBasedDownsampleSam CollectOxoGMetrics QualityScoreDistribution CollectQualityYieldMetrics RenameSampleInVcf CollectRawWgsMetrics ReorderSam CollectRnaSeqMetrics ReplaceSamHeader CollectRrbsMetrics RevertOriginalBaseQualitiesAndAddMateCigar CollectSequencingArtifactMetrics RevertSam CollectTargetedPcrMetrics SamFormatConverter CollectVariantCallingMetrics SamToFastq CollectWgsMetrics ScatterIntervalsByNs CompareMetrics SortSam CompareSAMs SortVcf ConvertSequencingArtifactToOxoG SplitSamByLibrary CreateSequenceDictionary SplitVcfs DownsampleSam UpdateVcfSequenceDictionary EstimateLibraryComplexity ValidateSamFile ExtractIlluminaBarcodes VcfFormatConverter ExtractSequences VcfToIntervalList FastqToSam ViewSam
その他の picard-tools 関連パッケージ
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- dep: default-jre
- Standard Java or Java compatible Runtime
- または java6-runtime
- 以下のパッケージによって提供される仮想パッケージです: default-jre, openjdk-11-jre, openjdk-17-jre, openjdk-18-jre, openjdk-8-jre
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- dep: libpicard-java (= 2.26.10+dfsg-1)
- Java library to manipulate SAM and BAM files