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パッケージ: r-bioc-genomicalignments (1.30.0-1)

r-bioc-genomicalignments に関するリンク

r-bioc-genomicalignments

Trisquel の資源:

r-bioc-genomicalignments ソースパッケージをダウンロード:

メンテナ:

Original Maintainers:

  • Debian R Packages Maintainers
  • Andreas Tille

外部の資源:

類似のパッケージ:

BioConductor representation and manipulation of short genomic alignments

This BioConductor package provides efficient containers for storing and manipulating short genomic alignments (typically obtained by aligning short reads to a reference genome). This includes read counting, computing the coverage, junction detection, and working with the nucleotide content of the alignments.

その他の r-bioc-genomicalignments 関連パッケージ

  • 依存
  • 推奨
  • 提案
  • dep: libc6 (>= 2.4)
    GNU C Library: Shared libraries
    以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
  • dep: r-api-4.0
    以下のパッケージによって提供される仮想パッケージです: r-base-core
  • dep: r-api-bioc-3.14
    以下のパッケージによって提供される仮想パッケージです: r-bioc-biocgenerics
  • dep: r-base-core (>= 4.1.2-1ubuntu1)
    GNU R core of statistical computation and graphics system
  • dep: r-bioc-biocgenerics (>= 0.37.0)
    generic functions for Bioconductor
  • dep: r-bioc-biocparallel
    BioConductor facilities for parallel evaluation
  • dep: r-bioc-biostrings (>= 2.55.7)
    GNU R string objects representing biological sequences
  • dep: r-bioc-genomeinfodb (>= 1.13.1)
    BioConductor utilities for manipulating chromosome identifiers
  • dep: r-bioc-genomicranges (>= 1.41.5)
    BioConductor representation and manipulation of genomic intervals
  • dep: r-bioc-iranges (>= 2.23.9)
    GNU R low-level containers for storing sets of integer ranges
  • dep: r-bioc-rsamtools (>= 1.31.2)
    GNU R binary alignment (BAM), variant call (BCF), or tabix file import
  • dep: r-bioc-s4vectors (>= 0.27.12)
    BioConductor S4 implementation of vectors and lists
  • dep: r-bioc-summarizedexperiment (>= 1.9.13)
    BioConductor assay container
  • sug: r-bioc-biocstyle
    standard styles for vignettes and other Bioconductor documents
  • sug: r-bioc-bsgenome
    BioConductor infrastructure for Biostrings-based genome data packages
  • sug: r-bioc-deseq2
    R package for RNA-Seq Differential Expression Analysis
  • sug: r-bioc-edger
    Empirical analysis of digital gene expression data in R
  • sug: r-bioc-genomicfeatures
    GNU R tools for making and manipulating transcript centric annotations
  • sug: r-bioc-rtracklayer
    GNU R interface to genome browsers and their annotation tracks
  • sug: r-bioc-shortread
    GNU R classes and methods for high-throughput short-read sequencing data
  • sug: r-cran-runit
    GNU R package providing unit testing framework

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