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Package: r-cran-bio3d (2.3-4-1)

GNU R package for biological structure analysis

The bio3d package contains utilities to process, organize and explore protein structure, sequence and dynamics data. Features include the ability to read and write structure, sequence and dynamic trajectory data, perform atom summaries, atom selection, re-orientation, superposition, rigid core identification, clustering, torsion analysis, distance matrix analysis, structure and sequence conservation analysis, and principal component analysis (PCA). In addition, various utility functions are provided to enable the statistical and graphical power of the R environment to work with biological sequence and structural data.

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  • dep: libc6 (>= 2.14) [amd64]
    GNU C Library: Shared libraries
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    dep: libc6 (>= 2.4) [i386]
  • dep: libgcc1 (>= 1:3.0)
    GCC support library
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3
  • dep: r-api-3.4
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  • dep: r-base-core (>= 3.4.3-1build1)
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  • dep: r-cran-rcpp
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  • dep: zlib1g (>= 1:1.1.4)
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  • rec: muscle
    Multiple alignment program of protein sequences
  • sug: mafft
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  • sug: r-cran-httr
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  • sug: r-cran-igraph
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  • sug: r-cran-rcurl
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  • sug: r-cran-testthat (>= 0.9.1)
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  • sug: r-cran-xml
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Download r-cran-bio3d

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 2,115.7 kB3117 kB [list of files]
i386 2,121.4 kB3127 kB [list of files]