Package: fastqc (0.11.5+dfsg-6)

Links for fastqc

Trisquel Resources:

Download Source Package fastqc:

Maintainer:

Debian Med Packaging Team (Mail Archive)

Original Maintainers:

Debian Med Packaging Team (Mail Archive)
Steffen Moeller
Andreas Tille
Olivier Sallou

External Resources:

Homepage [www.bioinformatics.babraham.ac.uk]

Similar packages:

quality control for high throughput sequence data

FastQC aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines. It provides a modular set of analyses which you can use to give a quick impression of whether your data has any problems of which you should be aware before doing any further analysis.

The main functions of FastQC are

 * Import of data from BAM, SAM or FastQ files (any variant)
 * Providing a quick overview to tell you in which areas there may
   be problems
 * Summary graphs and tables to quickly assess your data
 * Export of results to an HTML based permanent report
 * Offline operation to allow automated generation of reports without
   running the interactive application

Other Packages Related to fastqc

depends

recommends

suggests

dep: default-jre

Standard Java or Java compatible Runtime

or java7-runtime

virtual package provided by default-jre, openjdk-11-jre, openjdk-8-jre
dep: libcommons-math3-java

Java lightweight mathematics and statistics components
dep: libhtsjdk-java

Java API for high-throughput sequencing data (HTS) formats
dep: libjbzip2-java

bzip2 compression/decompression library

Download fastqc

Download for all available architectures
Architecture	Package Size	Installed Size	Files
all	345.9 kB	536 kB	[list of files]

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