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Package: blixem (4.44.1+dfsg-2build1)

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blixem

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Download Source Package seqtools:

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interactive browser of sequence alignments

Blixem is an interactive browser of sequence alignments that have been stacked up in a "master-slave" multiple alignment; it is not a 'true' multiple alignment but a 'one-to-many' alignment. 

 * Overview section showing the positions of genes and alignments around
   the alignment window
 * Detail section showing the actual alignment of protein or nucleotide
   sequences to the genomic DNA sequence.
 * View alignments against both strands of the reference sequence.
 * View sequences in nucleotide or protein mode; in protein mode, Blixem
   will display the three-frame translation of the reference sequence.
 * Residues are highlighted in different colours depending on whether
   they are an exact match, conserved substitution or mismatch.
 * Gapped alignments are supported, with insertions and deletions being
   highlighted in the match sequence.
 * Matches can be sorted and filtered.
 * SNPs and other variations can be highlighted in the reference
   sequence.
 * Poly(A) tails can be displayed and poly(A) signals highlighted in the
   reference sequence.

Other Packages Related to blixem

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.14) [amd64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.4) [i386]
  • dep: libcairo2 (>= 1.2.4)
    Cairo 2D vector graphics library
  • dep: libcurl4 (>= 7.16.2)
    easy-to-use client-side URL transfer library (OpenSSL flavour)
  • dep: libgbtools0
    library for visualising sequence alignments
  • dep: libgcc1 (>= 1:3.0)
    GCC support library
  • dep: libglib2.0-0 (>= 2.35.9)
    GLib library of C routines
  • dep: libgtk2.0-0 (>= 2.14.0)
    GTK+ graphical user interface library
  • dep: libpango-1.0-0 (>= 1.14.0)
    Layout and rendering of internationalized text
  • dep: libsqlite3-0 (>= 3.5.9)
    SQLite 3 shared library
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3

Download blixem

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 241.3 kB1034 kB [list of files]
i386 264.4 kB1176 kB [list of files]