Package: jellyfish-examples (2.3.0-12ubuntu2)
Links for jellyfish-examples
Trisquel Resources:
Download Source Package jellyfish:
- [jellyfish_2.3.0-12ubuntu2.dsc]
- [jellyfish_2.3.0.orig.tar.gz]
- [jellyfish_2.3.0-12ubuntu2.debian.tar.xz]
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Shaun Jackman
- Andreas Tille
- Michael R. Crusoe
- Étienne Mollier
External Resources:
- Homepage [github.com]
Similar packages:
count k-mers in DNA sequences (examples for testing)
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.
This package contains examples to test the package
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Download jellyfish-examples
Architecture | Package Size | Installed Size | Files |
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all | 12.4 kB | 64 kB | [list of files] |