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Package: bowtie2 (2.4.4-1)

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bowtie2

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Download Source Package bowtie2:

Maintainer:

Original Maintainers:

  • Debian Med Packaging Team (Mail Archive)
  • Alexandre Mestiashvili
  • Andreas Tille

External Resources:

Similar packages:

ultrafast memory-efficient short read aligner

is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes.

Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes

Other Packages Related to bowtie2

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libgcc-s1 (>= 3.3.1)
    GCC support library
  • dep: libstdc++6 (>= 9)
    GNU Standard C++ Library v3
  • dep: perl
    Larry Wall's Practical Extraction and Report Language
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
  • dep: zlib1g (>= 1:1.2.6)
    compression library - runtime

Download bowtie2

Download for all available architectures
Architecture Package Size Installed Size Files
arm64 1,178.2 kB3143 kB [list of files]