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Liens pour pigx-rnaseq

Ressources Trisquel :

• Rapports de bogues
• Changelog
• Fichier de licence
• Dépôt de source Debian (Git)

Responsable :

• Debian Med Packaging Team (Archive du courrier électronique)

Original Maintainers:

• Debian Med Packaging Team (Archive du courrier électronique)
• Steffen Moeller

Ressources externes :

• Page d'accueil [github.com]

Les paquets binaires suivants sont compilés à partir de ce paquet source :

pigx-rnaseq

pipeline for checkpointed and distributed RNA-seq analyses

Autres paquets associés à pigx-rnaseq

build-depends

build-depends-indep

• adep: debhelper-compat (= 13)

  Paquet indisponible

• adep: fastp

  Ultra-fast all-in-one FASTQ preprocessor

• adep: fastqc

  quality control for high throughput sequence data

• adep: hisat2

  graph-based alignment of short nucleotide reads to many genomes

• adep: libjs-jquery-datatables

  jQuery plug-in that makes nice tables from different data sources

• adep: libjs-jquery-tablesorter

  jQuery flexible client-side table sorting plugin

• adep: multiqc

  output integration for RNA sequencing across tools and samples

• adep: pandoc-citeproc

  Pandoc support for Citation Style Language - tools

• adep: python3-all

  package depending on all supported Python 3 runtime versions

• adep: python3-deeptools

  platform for exploring biological deep-sequencing data

• adep: python3-htseq

  Python3 high-throughput genome sequencing read analysis utilities

• adep: r-bioc-deseq2

  R package for RNA-Seq Differential Expression Analysis

• adep: r-bioc-rtracklayer

  GNU R interface to genome browsers and their annotation tracks

• adep: r-bioc-summarizedexperiment

  BioConductor assay container

• adep: r-bioc-tximport

  transcript-level estimates for biological sequencing

• adep: r-cran-corrplot

  Visualization of a Correlation Matrix

• adep: r-cran-crosstalk

  GNU R inter-widget interactivity for HTML widgets

• adep: r-cran-data.table

  GNU R extension of Data.frame

• adep: r-cran-dt (>= 0.15+dfsg-2)

  GNU R wrapper of the JavaScript library 'DataTables'

• adep: r-cran-ggplot2

  implementation of the Grammar of Graphics

• adep: r-cran-ggrepel

  auto-position non-overlapping text labels in plots

• adep: r-cran-gprofiler2

  Interface to the 'g:Profiler' Toolset

• adep: r-cran-ggpubr

  GNU R ggplot2 based publication ready plots

• adep: r-cran-locfit

  GNU R local regression, likelihood and density estimation

• adep: r-cran-pheatmap

  GNU R package to create pretty heatmaps

• adep: r-cran-plotly

  create interactive web graphics via 'plotly.js' in GNU R

• adep: r-cran-reshape2

  Flexibly reshape data: a reboot of the reshape package

• adep: r-cran-rjson

  GNU R package for converting between R and JSON objects

• adep: r-cran-rlang

  Functions for Base Types and Core R and 'Tidyverse' Features

• adep: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• adep: r-cran-scales

  Scale functions for visualization

• adep: salmon

  wicked-fast transcript quantification from RNA-seq data

• adep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• adep: snakemake

  pythonic workflow management system

• adep: trim-galore

  automate quality and adapter trimming for DNA sequencing

Download pigx-rnaseq

Fichier	Taille (en ko)	Somme MD5
pigx-rnaseq_0.0.19-2.dsc	2,8 ko	f763bb008c1435208c228d17ec886456
pigx-rnaseq_0.0.19.orig.tar.xz	4 314,7 ko	5d58c6d9634a7c3086a357759938b840
pigx-rnaseq_0.0.19-2.debian.tar.xz	12,1 ko	c0e2c3dd7cea791fc95143eb3c96e2d3

Dépôt Debian des paquets source (VCS: Git)

https://salsa.debian.org/med-team/pigx-rnaseq.git

Dépôt Debian des paquets source (interface web)

https://salsa.debian.org/med-team/pigx-rnaseq