Paquet : python3-presto (0.5.13-2)
Liens pour python3-presto
Ressources Trisquel :
Télécharger le paquet source presto :
Responsable :
Original Maintainers:
- Debian Python Modules Team (Archive du courrier électronique)
- Steffen Moeller
Ressources externes :
- Page d'accueil [presto.readthedocs.io]
Paquets similaires :
toolkit for processing B and T cell sequences
pRESTO is a toolkit for processing raw reads from high-throughput sequencing of B cell and T cell repertoires.
Dramatic improvements in high-throughput sequencing technologies now enable large-scale characterization of lymphocyte repertoires, defined as the collection of trans-membrane antigen-receptor proteins located on the surface of B cells and T cells. The REpertoire Sequencing TOolkit (pRESTO) is composed of a suite of utilities to handle all stages of sequence processing prior to germline segment assignment. pRESTO is designed to handle either single reads or paired-end reads. It includes features for quality control, primer masking, annotation of reads with sequence embedded barcodes, generation of unique molecular identifier (UMI) consensus sequences, assembly of paired-end reads and identification of duplicate sequences. Numerous options for sequence sorting, sampling and conversion operations are also included.
Autres paquets associés à python3-presto
|
|
|
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
-
- dep: python3-biopython (>= 1.65)
- Python3 library for bioinformatics
-
- dep: python3-numpy
- Fast array facility to the Python 3 language
-
- dep: python3-pandas (>= 0.15)
- data structures for "relational" or "labeled" data
-
- dep: python3-scipy
- scientific tools for Python 3
Télécharger python3-presto
| Architecture | Taille du paquet | Espace occupé une fois installé | Fichiers |
|---|---|---|---|
| all | 69,8 ko | 490 ko | [liste des fichiers] |