Skip to content
Sections
>> Trisquel >> Paquets >> nabia >> perl >> libjellyfish-perl
etiona  ] [  nabia  ] [  aramo  ]
[ Paquet source : jellyfish  ]

Paquet : libjellyfish-perl (2.3.0-4build1)

Liens pour libjellyfish-perl

libjellyfish-perl

Ressources Trisquel :

Télécharger le paquet source jellyfish :

Responsable :

Original Maintainers:

Ressources externes :

Paquets similaires :

count k-mers in DNA sequences (Perl bindings of jellyfish)

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

This package contains the Perl bindings of jellyfish.

Autres paquets associés à libjellyfish-perl

  • dépendances
  • recommandations
  • suggestions
  • dep: libc6 (>= 2.14)
    GNU C Library: Shared libraries
    un paquet virtuel est également fourni par libc6-udeb
  • dep: libgcc-s1 (>= 3.0)
    GCC support library
  • dep: perl (>= 5.30.0-9)
    Larry Wall's Practical Extraction and Report Language
  • dep: perlapi-5.30.0
    paquet virtuel fourni par perl-base

Télécharger libjellyfish-perl

Télécharger pour toutes les architectures proposées
Architecture Taille du paquet Espace occupé une fois installé Fichiers
amd64 57,9 ko183 ko [liste des fichiers]