Paquet : libtfbs-perl (0.7.1-3)
Liens pour libtfbs-perl
Ressources Trisquel :
Télécharger le paquet source libtfbs-perl :
Responsable :
Original Maintainers:
- Debian Med Packaging Team (Archive du courrier électronique)
- Steffen Moeller
- Charles Plessy
- Andreas Tille
Ressources externes :
- Page d'accueil [tfbs.genereg.net]
Paquets similaires :
scanning DNA sequence with a position weight matrix
The TFBS perl modules comprise a set of routines to interact with the Transfac and Jaspar databases that describe a special family of proteins, the transcription factors. These bind to genomic DNA to initiate (or prevent) the readout of a gene. Once multiple binding sites are known for a transcription factor, these are gathered in a single file and are aligned in order to find position-specific characteristica that might be used to predict such binding events in novel DNA sequences.
If you use TFBS in your work, please cite "Lenhard B., Wasserman W.W. (2002) TFBS: Computational framework for transcription factor binding site analysis. Bioinformatics 18:1135-1136".
Note: the TFBS perl module is no longer under active development. All the functionality can be found in the TFBSTools Bioconductor package; users are highly encouraged to switch. <http://bioconductor.org/packages/TFBSTools/>
Autres paquets associés à libtfbs-perl
|
|
|
-
- dep: bioperl
- Perl tools for computational molecular biology
-
- dep: libc6 (>= 2.14)
- GNU C Library: Shared libraries
un paquet virtuel est également fourni par libc6-udeb
-
- dep: libdbi-perl
- Perl Database Interface (DBI)
-
- dep: libwww-perl
- simple and consistent interface to the world-wide web
-
- dep: pdl (>= 1:2.019-5build2)
- perl data language: Perl extensions for numerics
-
- dep: perl (>= 5.30.0-8)
- Larry Wall's Practical Extraction and Report Language
-
- dep: perlapi-5.30.0
- paquet virtuel fourni par perl-base
-
- rec: libgd-gd2-perl
- paquet virtuel fourni par libgd-perl
- ou libgd-gd2-noxpm-perl
- paquet virtuel fourni par libgd-perl
Télécharger libtfbs-perl
Architecture | Taille du paquet | Espace occupé une fois installé | Fichiers |
---|---|---|---|
amd64 | 225,3 ko | 988 ko | [liste des fichiers] |