[ Paquet source : pbsuite ]
Paquet : pbhoney (15.8.24+dfsg-4)
Liens pour pbhoney
Ressources Trisquel :
Télécharger le paquet source pbsuite :
- [pbsuite_15.8.24+dfsg-4.dsc]
- [pbsuite_15.8.24+dfsg.orig.tar.xz]
- [pbsuite_15.8.24+dfsg-4.debian.tar.xz]
Responsable :
Original Maintainers:
- Debian Med Packaging Team (Archive du courrier électronique)
- Olivier Sallou
Ressources externes :
- Page d'accueil [sourceforge.net]
Paquets similaires :
genomic structural variation discovery
PBHoney is an implementation of two variant-identification approaches designed to exploit the high mappability of long reads (i.e., greater than 10,000 bp). PBHoney considers both intra-read discordance and soft-clipped tails of long reads to identify structural variants.
PBHoney is part of the PBSuite.
Autres paquets associés à pbhoney
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- dep: blasr (>= 5.3)
- mapping single-molecule sequencing reads
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-h5py
- general-purpose Python interface to hdf5 (Python 3)
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- dep: python3-intervaltree-bio
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- dep: python3-networkx
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- dep: python3-numpy
- Fast array facility to the Python 3 language
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- dep: python3-pbbanana (= 15.8.24+dfsg-4)
- additional utilities for the pbsuite
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- dep: python3-pbsuite-utils (= 15.8.24+dfsg-4)
- software for Pacific Biosciences sequencing data -- Python utilities
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- dep: python3-pysam (>= 0.8.0)
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
-
- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
-
- rec: pbdagcon
- sequence consensus using directed acyclic graphs
Télécharger pbhoney
| Architecture | Taille du paquet | Espace occupé une fois installé | Fichiers |
|---|---|---|---|
| all | 1 276,1 ko | 2353 ko | [liste des fichiers] |