Paquet : rna-star (2.5.4b+dfsg-1)
Liens pour rna-star
Ressources Trisquel :
Télécharger le paquet source rna-star :
- [rna-star_2.5.4b+dfsg-1.dsc]
- [rna-star_2.5.4b+dfsg.orig.tar.xz]
- [rna-star_2.5.4b+dfsg-1.debian.tar.xz]
Responsable :
Original Maintainers:
- Debian Med Packaging Team (Archive du courrier électronique)
- Steffen Moeller
- Andreas Tille
- Sascha Steinbiss
Ressources externes :
- Page d'accueil [github.com]
Paquets similaires :
ultrafast universal RNA-seq aligner
Spliced Transcripts Alignment to a Reference (STAR) software based on a previously undescribed RNA-seq alignment algorithm that uses sequential maximum mappable seed search in uncompressed suffix arrays followed by seed clustering and stitching procedure. STAR outperforms other aligners by a factor of >50 in mapping speed, aligning to the human genome 550 million 2 × 76 bp paired-end reads per hour on a modest 12-core server, while at the same time improving alignment sensitivity and precision. In addition to unbiased de novo detection of canonical junctions, STAR can discover non-canonical splices and chimeric (fusion) transcripts, and is also capable of mapping full-length RNA sequences. Using Roche 454 sequencing of reverse transcription polymerase chain reaction amplicons, the authors experimentally validated 1960 novel intergenic splice junctions with an 80-90% success rate, corroborating the high precision of the STAR mapping strategy.
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Télécharger rna-star
| Architecture | Taille du paquet | Espace occupé une fois installé | Fichiers |
|---|---|---|---|
| amd64 | 370,8 ko | 855 ko | [liste des fichiers] |