Skip to content
Sections
>> Trisquel >> Paquets >> etiona >> science >> profphd
[  etiona  ]
[ Paquet source : profphd  ]

Paquet : profphd (1.0.42-2)

secondary structure and solvent accessibility predictor

This package provides prof(1), the protein secondary structure, accessibility and transmembrane helix predictor from Burkhard Rost. Prediction is either done from protein sequence alone or from an alignment - the latter should be used for optimal performance.

How well does prof(1) perform? 

 * Secondary structure is predicted at an expected average accuracy > 72% for
   the three states helix, strand and loop.


 * Solvent accessibility is predicted at a correlation coefficient
   (correlation between experimentally observed and predicted relative
   solvent accessibility) of 0.54


 * Transmembrane helix prediction has an expected per-residue accuracy of
   about 95%.  The number of false positives, i.e., transmembrane helices
   predicted in globular proteins, is about 2%.

Autres paquets associés à profphd

  • dépendances
  • recommandations
  • suggestions
  • dep: librg-utils-perl
    parsers and format conversion utilities used by (e.g.) profphd
  • dep: perl
    Larry Wall's Practical Extraction and Report Language
  • dep: profnet-prof
    neural network architecture for profacc
  • dep: profphd-net
    neural network architecture for profphd
  • dep: profphd-utils
    profphd helper utilities convert_seq and filter_hssp

Télécharger profphd

Télécharger pour toutes les architectures proposées
Architecture Taille du paquet Espace occupé une fois installé Fichiers
all 4 406,4 ko26198 ko [liste des fichiers]