Paquet : augustus (3.3+dfsg-2build1)
Liens pour augustus
Ressources Trisquel :
Télécharger le paquet source augustus :
- [augustus_3.3+dfsg-2build1.dsc]
- [augustus_3.3+dfsg.orig.tar.xz]
- [augustus_3.3+dfsg-2build1.debian.tar.xz]
Responsable :
Original Maintainers:
- Debian Med Packaging Team (Archive du courrier électronique)
- Sascha Steinbiss
Ressources externes :
- Page d'accueil [bioinf.uni-greifswald.de]
Paquets similaires :
gene prediction in eukaryotic genomes
AUGUSTUS is a software for gene prediction in eukaryotic genomic sequences that is based on a generalized hidden Markov model (HMM), a probabilistic model of a sequence and its gene structure. After learning gene structures from a reference annotation, AUGUSTUS uses the HMM to recognize genes in a new sequence and annotates it with the regions of identified genes. External hints, e.g. from RNA sequencing, EST or protein alignments etc. can be used to guide and improve the gene finding process. The result is the set of most likely gene structures that comply with all given user constraints, if such gene structures exist. AUGUSTUS already includes prebuilt HMMs for many species, as well as scripts to train custom models using annotated genomes.
Autres paquets associés à augustus
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- dep: augustus-data
- data files for AUGUSTUS
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- dep: libbamtools2.4.0
- dynamic library for manipulating BAM (genome alignment) files
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- dep: libboost-iostreams1.65.1
- Boost.Iostreams Library
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- dep: libc6 (>= 2.15)
- GNU C Library: Shared libraries
un paquet virtuel est également fourni par libc6-udeb
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- dep: libgcc1 (>= 1:4.0)
- GCC support library
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- dep: libstdc++6 (>= 6)
- GNU Standard C++ Library v3
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- dep: zlib1g (>= 1:1.2.3.3)
- compression library - runtime
Télécharger augustus
| Architecture | Taille du paquet | Espace occupé une fois installé | Fichiers |
|---|---|---|---|
| amd64 | 1 117,2 ko | 4740 ko | [liste des fichiers] |
| i386 | 1 156,3 ko | 4984 ko | [liste des fichiers] |