[ nabia ]
[ aramo ]
[ Paquet source : optimir ]
Paquet : optimir (1.1-1)
Liens pour optimir
Ressources Trisquel :
Télécharger le paquet source optimir :
Responsable :
Original Maintainers:
- Debian Med Packaging Team (Archive du courrier électronique)
- Dylan Aïssi
Ressources externes :
- Page d'accueil [github.com]
Paquets similaires :
Integrating genetic variations in miRNA alignment
OptimiR is a miRSeq data alignment workflow. It integrates genetic information to assess the impact of variants on miRNA expression.
OptimiR: A bioinformatics pipeline designed to detect and quantify miRNAs, isomiRs and polymiRs from miRSeq data, & study the impact of genetic variations on polymiRs' expression.
Autres paquets associés à optimir
|
|
|
-
- dep: bowtie2
- ultrafast memory-efficient short read aligner
-
- dep: cutadapt
- Clean biological sequences from high-throughput sequencing reads
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
-
- dep: python3-biopython
- Python3 library for bioinformatics
-
- dep: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
-
- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
-
- rec: r-cran-ggplot2
- implementation of the Grammar of Graphics
-
- rec: r-cran-gridextra
- GNU R package with extensions for the grid package
Télécharger optimir
| Architecture | Taille du paquet | Espace occupé une fois installé | Fichiers |
|---|---|---|---|
| all | 1 100,5 ko | 7402 ko | [liste des fichiers] |