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Paquet : jellyfish (2.3.0-12ubuntu2)

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jellyfish

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count k-mers in DNA sequences

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

Autres paquets associés à jellyfish

  • dépendances
  • recommandations
  • suggestions
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    un paquet virtuel est également fourni par libc6-udeb
  • dep: libgcc-s1 (>= 3.3.1) [non armhf]
    GCC support library
    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: libhts3 (>= 1.10)
    C library for high-throughput sequencing data formats
  • dep: libjellyfish-2.0-2 (= 2.3.0-12ubuntu2)
    count k-mers in DNA sequences (dynamic library of jellyfish)
  • dep: libstdc++6 (>= 11)
    GNU Standard C++ Library v3

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Architecture Taille du paquet Espace occupé une fois installé Fichiers
amd64 757,3 ko2220 ko [liste des fichiers]
arm64 693,3 ko1968 ko [liste des fichiers]
armhf 734,2 ko1446 ko [liste des fichiers]
ppc64el 808,3 ko2700 ko [liste des fichiers]