Paquet : seer (1.1.4-6)
Liens pour seer
Ressources Trisquel :
Télécharger le paquet source seer :
Responsable :
Original Maintainers:
- Debian Med Packaging Team (Archive du courrier électronique)
- Andreas Tille
Ressources externes :
- Page d'accueil [github.com]
Paquets similaires :
genomic sequence element (kmer) enrichment analysis
Bacterial genomes vary extensively in terms of both gene content and gene sequence - this plasticity hampers the use of traditional SNP-based methods for identifying all genetic associations with phenotypic variation. SEER provides a computationally scalable and widely applicable statistical method for the identification of sequence elements that are significantly enriched in a phenotype of interest. SEER is applicable to even tens of thousands of genomes by counting variable- length k-mers using a distributed string-mining algorithm. Robust options are provided for association analysis that also correct for the clonal population structure of bacteria. Using large collections of genomes of the major human pathogen Streptococcus pneumoniae, SEER identifies relevant previously characterised resistance determinants for several antibiotics.
Autres paquets associés à seer
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- dep: libarmadillo10 (>= 1:10.6.2+dfsg)
- streamlined C++ linear algebra library
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- dep: libblas3
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- ou libblas.so.3
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- dep: libc6 (>= 2.34)
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un paquet virtuel est également fourni par libc6-udeb
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- dep: libgcc-s1 (>= 3.5)
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- dep: libgzstream0 (>= 1.5+dfsg)
- provide functionality of zlib C-library in a C++ iostream
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- comma-separated values manipulator (using XS or PurePerl)
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- dep: zlib1g (>= 1:1.1.4)
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- sug: fsm-lite
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Télécharger seer
| Architecture | Taille du paquet | Espace occupé une fois installé | Fichiers |
|---|---|---|---|
| armhf | 1 152,5 ko | 4157 ko | [liste des fichiers] |