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[ Paquet source : stringtie  ]

Paquet : stringtie (2.2.1+ds-2)

assemble short RNAseq reads to transcripts

The abundance of transcripts in a human tissue sample can be determined by RNA sequencing. The exact sequence sampled may be random, depending on the technology used. And it may be short, i.e. shorter than the transcript. At some point, many shorter reads need to be assembled to the model the complete transcripts.

StringTie knows how to assemble of RNA-Seq into potential transcripts without the need of a reference genome and provides a quantification also of the splice variants.

Autres paquets associés à stringtie

  • dépendances
  • recommandations
  • suggestions
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    un paquet virtuel est également fourni par libc6-udeb
  • dep: libgcc-s1 (>= 3.5)
    GCC support library
  • dep: libhts3 (>= 1.13)
    C library for high-throughput sequencing data formats
  • dep: libstdc++6 (>= 4.1.1)
    GNU Standard C++ Library v3
  • rec: stringtie-examples
    Paquet indisponible
  • sug: cufflinks
    Paquet indisponible

Télécharger stringtie

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armhf 379,4 ko664 ko [liste des fichiers]