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Paquet : ampliconnoise (1.29-10build1)

removal of noise from 454 sequenced PCR amplicons

AmpliconNoise is a package of applications to clean up high-throughput sequence data. It consists of three main parts:

Pyronoise - does flowgram-based clustering to spot misreads SeqNoise - removes PCR point mutations Perseus - removes PCR chimeras without the need for a set of reference sequences

Previously there was a standalone "Pyronoise" by the same authors and this package includes an updated version. There is also a "Denoiser" in Qiime which is related but distinct.

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  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    un paquet virtuel est également fourni par libc6-udeb
  • dep: libgsl27 (>= 2.7.1)
    GNU Scientific Library (GSL) -- library package
  • dep: libopenmpi3 (>= 4.1.0)
    high performance message passing library -- shared library
  • dep: mafft
    Multiple alignment program for amino acid or nucleotide sequences
  • rec: openmpi-bin
    high performance message passing library -- binaries

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armhf 1 077,3 ko1835 ko [liste des fichiers]