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Paquet : sepp (4.5.1+really4.5.1+dfsg-3)

phylogeny with ensembles of Hidden Markov Models

The tool SEPP implementing these methods uses ensembles of Hidden Markov Models (HMMs) in different ways, each focusing on a different problem.

SEPP stands for "SATe-enabled Phylogenetic Placement", and addresses the problem of phylogenetic placement of short reads into reference alignments and trees.

Autres paquets associés à sepp

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  • dep: default-jre
    Standard Java or Java compatible Runtime
  • dep: hmmer
    profile hidden Markov models for protein sequence analysis
  • dep: libgoogle-gson-java
    Converts Java objects into their JSON representation
  • dep: libjenkins-json-java
    Library for transforming Java objects between XML and JSON
  • dep: libjson-java
    library for transforming Java objects and XML to JSON and back again
  • dep: ncbi-blast+
    next generation suite of BLAST sequence search tools
  • dep: pplacer
    phylogenetic placement and downstream analysis
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
  • dep: python3-dendropy
    DendroPy Phylogenetic Computing Library (Python 3)

Télécharger sepp

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amd64 158,1 ko391 ko [liste des fichiers]