[ Source: mira ]
Paketti: mira-assembler (4.9.6-4build5)
Links for mira-assembler
Trisquel-palvelut:
Imuroi lähdekoodipaketti mira:
Ylläpitäjä:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Charles Plessy
- Steffen Moeller
- Tim Booth
- Andreas Tille
- Thorsten Alteholz
- Michael R. Crusoe
External Resources:
- Kotisivu [chevreux.org]
Samankaltaisia paketteja:
Whole Genome Shotgun and EST Sequence Assembler
The mira genome fragment assembler is a specialised assembler for sequencing projects classified as 'hard' due to high number of similar repeats. For expressed sequence tags (ESTs) transcripts, miraEST is specialised on reconstructing pristine mRNA transcripts while detecting and classifying single nucleotide polymorphisms (SNP) occurring in different variations thereof.
The assembler is routinely used for such various tasks as mutation detection in different cell types, similarity analysis of transcripts between organisms, and pristine assembly of sequences from various sources for oligo design in clinical microarray experiments.
The package provides the following executables: Binaries provided:
* mira: for assembly of genome sequences * miramem: estimating memory needed to assemble projects. * mirabait: a "grep" like tool to select reads with kmers up to 256 bases. * miraconvert: is a tool to convert, extract and sometimes recalculate all kinds of data related to sequence assembly files.
Muut pakettiin mira-assembler liittyvät paketit
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- dep: libboost-filesystem1.71.0
- filesystem operations (portable paths, iteration over directories, etc) in C++
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- dep: libboost-regex1.71.0-icu66
- näennäispaketti, jonka toteuttaa libboost-regex1.71.0
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- dep: libboost-thread1.71.0
- portable C++ multi-threading
-
- dep: libc6 (>= 2.29)
- GNU C Library: Shared libraries
myös näennäispaketti, jonka toteuttaa libc6-udeb
-
- dep: libexpat1 (>= 2.0.1)
- XML parsing C library - runtime library
-
- dep: libgcc-s1 (>= 3.0) [amd64]
- GCC support library
- dep: libgcc-s1 (>= 3.5) [armhf]
-
- dep: libgomp1 (>= 4.9)
- GCC OpenMP (GOMP) support library
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- dep: libstdc++6 (>= 9)
- GNU Standard C++ Library v3
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- dep: zlib1g (>= 1:1.2.6)
- compression library - runtime
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- rec: mira-rfam-12s-rrna
- extract of RFAM 12 rRNA database
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- sug: mira-doc
- documentation for the mira assembler
Imuroi mira-assembler
| Arkkitehtuuri | Paketin koko | Koko asennettuna | Tiedostot |
|---|---|---|---|
| amd64 | 2,291.8 kt | 7354 kt | [tiedostoluettelo] |
| armhf | 1,920.4 kt | 4835 kt | [tiedostoluettelo] |