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Paketti: libbio-db-hts-perl (3.01-3)

Perl interface to the HTS library

HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call Format), used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang.

HTSlib implements a generalized BAM (binary SAM) index, with file extension 'csi' (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent.

This package provides a Perl interface to the HTS library.

Muut pakettiin libbio-db-hts-perl liittyvät paketit

  • depends
  • recommends
  • suggests
  • dep: libbio-perl-perl
    BioPerl core perl modules
  • dep: libc6 (>= 2.14) [amd64]
    GNU C Library: Shared libraries
    myös näennäispaketti, jonka toteuttaa libc6-udeb
    dep: libc6 (>= 2.4) [armhf]
  • dep: libhts3 (>= 1.10)
    C library for high-throughput sequencing data formats
  • dep: perl (>= 5.30.0-9)
    Larry Wall's Practical Extraction and Report Language
  • dep: perlapi-5.30.0
    näennäispaketti, jonka toteuttaa perl-base
  • dep: zlib1g (>= 1:1.2.3.3)
    compression library - runtime

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