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Paketti: hinge (0.5.0-6)

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hinge

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long read genome assembler based on hinging

HINGE is a genome assembler that seeks to achieve optimal repeat resolution by distinguishing repeats that can be resolved given the data from those that cannot. This is accomplished by adding “hinges” to reads for constructing an overlap graph where only unresolvable repeats are merged. As a result, HINGE combines the error resilience of overlap-based assemblers with repeat-resolution capabilities of de Bruijn graph assemblers.

Muut pakettiin hinge liittyvät paketit

  • depends
  • recommends
  • suggests
  • dep: daligner
    local alignment discovery between long nucleotide sequencing reads
  • dep: dascrubber
    alignment-based scrubbing pipeline for DNA sequencing reads
  • dep: dazzdb
    manage nucleotide sequencing read data
  • dep: libc6 (>= 2.27)
    GNU C Library: Shared libraries
    myös näennäispaketti, jonka toteuttaa libc6-udeb
  • dep: libgcc-s1 (>= 3.0) [amd64]
    GCC support library
    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: libgomp1 (>= 4.2.1)
    GCC OpenMP (GOMP) support library
  • dep: libstdc++6 (>= 9)
    GNU Standard C++ Library v3
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
  • dep: python3-colormap
    ease manipulation of matplotlib colormaps and color codecs (Python 3)
  • dep: python3-matplotlib
    Python based plotting system in a style similar to Matlab (Python 3)
  • dep: python3-networkx
    tool to create, manipulate and study complex networks (Python3)
  • dep: python3-numpy
    Fast array facility to the Python 3 language
  • dep: python3-pbcore
    Python 3 library for processing PacBio data files
  • dep: python3-ujson
    ultra fast JSON encoder and decoder for Python 3
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime

Imuroi hinge

Imurointi kaikille saataville arkkitehtuureille
Arkkitehtuuri Paketin koko Koko asennettuna Tiedostot
amd64 541.3 kt4103 kt [tiedostoluettelo]
armhf 465.5 kt2826 kt [tiedostoluettelo]