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[ Source: ncbi-entrez-direct  ]

Paketti: ncbi-entrez-direct (12.0.20190816+ds-1ubuntu0.2)

NCBI Entrez utilities on the command line

Entrez Direct (EDirect) is an advanced method for accessing NCBI's set of interconnected databases (publication, sequence, structure, gene, variation, expression, etc.) from a terminal window or script. Functions take search terms from command-line arguments. Individual operations are combined to build multi-step queries. Record retrieval and formatting normally complete the process.

EDirect also provides an argument-driven function that simplifies the extraction of data from document summaries or other results that are returned in structured XML format. This can eliminate the need for writing custom software to answer ad hoc questions. Queries can move seamlessly between EDirect commands and UNIX utilities or scripts to perform actions that cannot be accomplished entirely within Entrez.

Muut pakettiin ncbi-entrez-direct liittyvät paketit

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.4)
    GNU C Library: Shared libraries
    myös näennäispaketti, jonka toteuttaa libc6-udeb
  • dep: libwww-perl
    simple and consistent interface to the world-wide web
  • dep: libxml-simple-perl
    Perl module for reading and writing XML
  • dep: perl
    Larry Wall's Practical Extraction and Report Language

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