[ Source: trinityrnaseq ]
Paketti: trinityrnaseq (2.5.1+dfsg-2)
Links for trinityrnaseq
Trisquel-palvelut:
Imuroi lähdekoodipaketti trinityrnaseq:
- [trinityrnaseq_2.5.1+dfsg-2.dsc]
- [trinityrnaseq_2.5.1+dfsg.orig.tar.xz]
- [trinityrnaseq_2.5.1+dfsg-2.debian.tar.xz]
Ylläpitäjä:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Michael R. Crusoe
External Resources:
- Kotisivu [trinityrnaseq.github.io]
Samankaltaisia paketteja:
RNA-Seq De novo Assembly
Trinity represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq data. Trinity combines three independent software modules: Inchworm, Chrysalis, and Butterfly, applied sequentially to process large volumes of RNA-seq reads. Trinity partitions the sequence data into many individual de Bruijn graphs, each representing the transcriptional complexity at a given gene or locus, and then processes each graph independently to extract full-length splicing isoforms and to tease apart transcripts derived from paralogous genes.
Muut pakettiin trinityrnaseq liittyvät paketit
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- dep: berkeley-express
- Streaming quantification for high-throughput sequencing
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- dep: bowtie
- Ultrafast memory-efficient short read aligner
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- dep: bowtie2
- ultrafast memory-efficient short read aligner
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- dep: curl
- command line tool for transferring data with URL syntax
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- dep: default-jre-headless
- Standard Java or Java compatible Runtime (headless)
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- dep: jaligner
- Smith-Waterman algorithm with Gotoh's improvement
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- dep: jellyfish
- count k-mers in DNA sequences
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- dep: libc6 (>= 2.14)
- GNU C Library: Shared libraries
myös näennäispaketti, jonka toteuttaa libc6-udeb
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- dep: libcommons-collections4-java
- Apache Commons Collections - Extended Collections API for Java
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- dep: libgcc1 (>= 1:3.0)
- GCC support library
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- dep: libgetopt-java
- GNU getopt - Java port
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- dep: libgomp1 (>= 4.9)
- GCC OpenMP (GOMP) support library
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- dep: libhts2 (>= 1.0)
- C library for high-throughput sequencing data formats
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- dep: libjung-free-java
- Java Universal Network/Graph Framework
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- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
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- dep: libwww-perl
- simple and consistent interface to the world-wide web
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- dep: parafly
- parallel command processing using OpenMP
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- dep: perl
- Larry Wall's Practical Extraction and Report Language
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- dep: python
- interactive high-level object-oriented language (default version)
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- dep: r-base-core
- GNU R core of statistical computation and graphics system
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- dep: r-bioc-qvalue
- GNU R package for Q-value estimation for FDR control
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- dep: r-cran-cluster
- GNU R package for cluster analysis by Rousseeuw et al
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- dep: rsem
- RNA-Seq by Expectation-Maximization
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- dep: samtools
- processing sequence alignments in SAM and BAM formats
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- dep: transdecoder
- find coding regions within RNA transcript sequences
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- dep: trimmomatic
- flexible read trimming tool for Illumina NGS data
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- rec: trinityrnaseq-examples
- RNA-Seq De novo Assembly common example and testing files
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- sug: collectl
- Utility to collect Linux performance data
Imuroi trinityrnaseq
| Arkkitehtuuri | Paketin koko | Koko asennettuna | Tiedostot |
|---|---|---|---|
| amd64 | 1,748.1 kt | 8892 kt | [tiedostoluettelo] |