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Paketti: python3-presto (0.7.2-1)

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python3-presto

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toolkit for processing B and T cell sequences (Python3 module)

pRESTO is a toolkit for processing raw reads from high-throughput sequencing of B cell and T cell repertoires.

Dramatic improvements in high-throughput sequencing technologies now enable large-scale characterization of lymphocyte repertoires, defined as the collection of trans-membrane antigen-receptor proteins located on the surface of B cells and T cells. The REpertoire Sequencing TOolkit (pRESTO) is composed of a suite of utilities to handle all stages of sequence processing prior to germline segment assignment. pRESTO is designed to handle either single reads or paired-end reads. It includes features for quality control, primer masking, annotation of reads with sequence embedded barcodes, generation of unique molecular identifier (UMI) consensus sequences, assembly of paired-end reads and identification of duplicate sequences. Numerous options for sequence sorting, sampling and conversion operations are also included.

This package provides the presto Python3 module.

Muut pakettiin python3-presto liittyvät paketit

  • depends
  • recommends
  • suggests
  • dep: cd-hit
    suite of programs designed to quickly group sequences
  • dep: ncbi-blast+
    next generation suite of BLAST sequence search tools
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
  • dep: python3-biopython
    Python3 library for bioinformatics
  • dep: python3-numpy
    Fast array facility to the Python language (Python 3)
  • dep: python3-packaging
    core utilities for python3 packages
  • dep: python3-pandas
    data structures for "relational" or "labeled" data
  • dep: python3-scipy
    scientific tools for Python 3
  • dep: vsearch [ei armhf, riscv64]
    tool for processing metagenomic sequences

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