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Paketti: tvc (5.0.3+git20151221.80e144e+dfsg-4build1)

genetic variant caller for Ion Torrent sequencing platforms

Torrent Variant Caller (TVC) is a genetic variant caller for Ion Torrent sequencing platforms, and is specially optimized to exploit the underlying flow signal information in the statistical model to evaluate variants. Torrent Variant Caller is designed to call single-nucleotide polymorphisms (SNPs), multi-nucleotide polymorphisms (MNPs), insertions, deletions, and block substitutions.

Muut pakettiin tvc liittyvät paketit

  • depends
  • recommends
  • suggests
  • dep: libarmadillo10 (>= 1:10.7.4+dfsg)
    streamlined C++ linear algebra library
  • dep: libbamtools2.5.1 (>= 2.5.1+dfsg)
    dynamic library for manipulating BAM (genome alignment) files
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    myös näennäispaketti, jonka toteuttaa libc6-udeb
  • dep: libdisorder0 (>= 0.0.2)
    library for entropy measurement of byte streams
  • dep: libgcc-s1 (>= 3.3.1) [amd64]
    GCC support library
    dep: libgcc-s1 (>= 3.4.4) [ppc64el]
    dep: libgcc-s1 (>= 3.5) [armhf]
    dep: libgcc-s1 (>= 4.5) [arm64]
  • dep: libjsoncpp25 (>= 1.9.5)
    library for reading and writing JSON for C++
  • dep: libsmithwaterman0 (>= 0.0+git20160702.2610e25)
    determine similar regions between two strings or genomic sequences (lib)
  • dep: libstdc++6 (>= 11)
    GNU Standard C++ Library v3
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime

Imuroi tvc

Imurointi kaikille saataville arkkitehtuureille
Arkkitehtuuri Paketin koko Koko asennettuna Tiedostot
amd64 1,084.8 kt3076 kt [tiedostoluettelo]
arm64 1,042.3 kt2844 kt [tiedostoluettelo]
armhf 1,045.2 kt2629 kt [tiedostoluettelo]
ppc64el 1,195.3 kt3600 kt [tiedostoluettelo]