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Paketti: surpyvor (0.5-2)

modification of VCF files with SURVIVOR

SURVIVOR is a tool set for simulating/evaluating structural variations, merging and comparing SVs within and among samples, and includes various methods to reformat or summarize structural variations.

This package provides a Python wrapper to help with its integration in various Python-based workflows.

Muut pakettiin surpyvor liittyvät paketit

  • depends
  • recommends
  • suggests
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
  • dep: python3-cyvcf2
    VCF parser based on htslib (Python 3)
  • dep: python3-matplotlib-venn
    Python 3 plotting area-proportional two- and three-way Venn diagrams
  • dep: python3-upsetplot
    Draw Lex et al.'s UpSet plots with Pandas and Matplotlib
  • dep: survivor
    tool set for simulating/evaluating SVs

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