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Paketti: dotter (4.44.1+dfsg-7build1)

detailed comparison of two genomic sequences

Dotter is a graphical dot-matrix program for detailed comparison of two sequences. 

 * Every residue in one sequence is compared to every residue in the
   other, and a matrix of scores is calculated.
 * One sequence is plotted on the x-axis and the other on the y-axis.
 * Noise is filtered out so that alignments appear as diagonal lines.
 * Pairwise scores are averaged over a sliding window to make the score
   matrix more intelligible.
 * The averaged score matrix forms a three-dimensional landscape,
   with the two sequences in two dimensions and the height of the
   peaks in the third. This landscape is projected onto two
   dimensions using a grey-scale image - the darker grey of a peak,
   the higher the score is.
 * The contrast and threshold of the grey-scale image can be adjusted
   interactively, without having to recalculate the score matrix.
 * An Alignment Tool is provided to examine the sequence alignment that
   the grey-scale image represents.
 * Known high-scoring pairs can be loaded from a GFF file and overlaid
   onto the plot.
 * Gene models can be loaded from GFF and displayed alongside the
   relevant axis.
 * Compare a sequence against itself to find internal repeats.
 * Find overlaps between multiple sequences by making a dot-plot of all
   sequences versus themselves.
 * Run Dotter in batch mode to create large, time-consuming dot-plots as
   a background process.

Muut pakettiin dotter liittyvät paketit

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    myös näennäispaketti, jonka toteuttaa libc6-udeb
  • dep: libcairo2 (>= 1.2.4)
    Cairo 2D vector graphics library
  • dep: libcurl4 (>= 7.16.2)
    easy-to-use client-side URL transfer library (OpenSSL flavour)
  • dep: libgbtools0 (>= 4.44.1+dfsg)
    library for visualising sequence alignments
  • dep: libgcc-s1 (>= 3.3.1) [ei armhf]
    GCC support library
    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: libglib2.0-0 (>= 2.16.0) [ei armhf]
    GLib library of C routines
    dep: libglib2.0-0 (>= 2.22.0) [armhf]
  • dep: libgtk2.0-0 (>= 2.12.0)
    GTK graphical user interface library - old version
  • dep: libpango-1.0-0 (>= 1.14.0)
    Layout and rendering of internationalized text
  • dep: libpangocairo-1.0-0 (>= 1.14.0)
    Layout and rendering of internationalized text
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3

Imuroi dotter

Imurointi kaikille saataville arkkitehtuureille
Arkkitehtuuri Paketin koko Koko asennettuna Tiedostot
amd64 491.2 kt667 kt [tiedostoluettelo]
arm64 483.8 kt635 kt [tiedostoluettelo]
armhf 492.4 kt601 kt [tiedostoluettelo]
ppc64el 503.6 kt735 kt [tiedostoluettelo]