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Package: tophat (2.1.1+dfsg1-1)

Links for tophat

tophat

Trisquel Resources:

Download Source Package tophat:

Maintainer:

Original Maintainers:

  • Debian Med Packaging Team (Mail Archive)
  • Carlos Borroto
  • Alexandre Mestiashvili
  • Andreas Tille

External Resources:

Similar packages:

fast splice junction mapper for RNA-Seq reads

TopHat aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons. TopHat is a collaborative effort between the University of Maryland Center for Bioinformatics and Computational Biology and the University of California, Berkeley Departments of Mathematics and Molecular and Cell Biology.

Other Packages Related to tophat

  • depends
  • recommends
  • suggests
  • dep: bowtie2
    ultrafast memory-efficient short read aligner
    or bowtie
    Ultrafast memory-efficient short read aligner
  • dep: libboost-system1.65.1
    Operating system (e.g. diagnostics support) library
  • dep: libboost-thread1.65.1
    portable C++ multi-threading
  • dep: libc6 (>= 2.15)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libgcc1 (>= 1:3.0)
    GCC support library
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3
  • dep: python
    interactive high-level object-oriented language (default version)
  • dep: samtools (>= 1.5)
    processing sequence alignments in SAM and BAM formats
  • dep: zlib1g (>= 1:1.2.3.3)
    compression library - runtime
  • sug: cufflinks
    Package not available

Download tophat

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 659.8 kB3807 kB [list of files]