Package: stacks-web (2.0Beta8c+dfsg-1)

Links for stacks-web

Trisquel Resources:

Download Source Package stacks:

Maintainer:

Debian Med Packaging Team (Mail Archive)

Original Maintainers:

Debian Med Packaging Team (Mail Archive)
Tim Booth
Andreas Tille

External Resources:

Homepage [creskolab.uoregon.edu]

Similar packages:

web interface for displaying loci from short-read sequences

Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography.

This package provides the web-based viewer which you can use to examine Stacks output that has been loaded into a MySQL database.

Other Packages Related to stacks-web

depends

recommends

suggests

dep: apache2

Apache HTTP Server

or httpd

virtual package provided by aolserver4-core, aolserver4-daemon, apache2, ebhttpd, lighttpd, micro-httpd, mini-httpd, nginx-core, nginx-extras, nginx-full, nginx-light, tntnet, webfs, yaws
dep: default-mysql-server

MySQL database server binaries and system database setup (metapackage)

or virtual-mysql-server

virtual package provided by mariadb-server-10.1, mysql-server-5.7, percona-xtradb-cluster-server-5.7
dep: libapache2-mod-php

server-side, HTML-embedded scripting language (Apache 2 module) (default)
also a virtual package provided by libapache2-mod-php7.2

or php-cgi

server-side, HTML-embedded scripting language (CGI binary) (default)
also a virtual package provided by php7.2-cgi
dep: libdbd-mysql-perl

Perl5 database interface to the MariaDB/MySQL database
dep: php-mdb2-driver-mysql

mysql MDB2 driver

rec: stacks

pipeline for building loci from short-read DNA sequences

Download stacks-web

Download for all available architectures
Architecture	Package Size	Installed Size	Files
all	55.4 kB	354 kB	[list of files]

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