[ Source: parsnp ]
Package: parsnp (1.2+dfsg-3)
Links for parsnp
Trisquel Resources:
Download Source Package parsnp:
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Andreas Tille
External Resources:
- Homepage [harvest.readthedocs.org]
Similar packages:
rapid core genome multi-alignment
Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surrounding SNP sites for filtration/cleaning, in addition to existing tools for recombination detection/filtration and phylogenetic reconstruction.
Other Packages Related to parsnp
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- dep: fasttree
- phylogenetic trees from alignments of nucleotide or protein sequences
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- dep: libc6 (>= 2.14) [amd64]
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
- dep: libc6 (>= 2.4) [i386]
-
- dep: libgcc1 (>= 1:3.0)
- GCC support library
-
- dep: libgomp1 (>= 4.9)
- GCC OpenMP (GOMP) support library
-
- dep: libmuscle-3.7-1
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-
- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
-
- dep: mummer
- Efficient sequence alignment of full genomes
-
- dep: phipack
- PHI test and other tests of recombination
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- dep: python
- interactive high-level object-oriented language (default version)
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- dep: python-numpy
- Numerical Python adds a fast array facility to the Python language
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- rec: python-dendropy
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Download parsnp
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| amd64 | 516.1 kB | 909 kB | [list of files] |
| i386 | 519.2 kB | 924 kB | [list of files] |