Skip to content
Sections
>> Trisquel >> Packages >> etiona >> science >> mira-assembler
etiona  ] [  nabia  ] [  aramo  ]
[ Source: mira  ]

Package: mira-assembler (4.9.6-3build2)

Links for mira-assembler

mira-assembler

Trisquel Resources:

Download Source Package mira:

Maintainer:

Original Maintainers:

  • Debian Med Packaging Team (Mail Archive)
  • Charles Plessy
  • Steffen Moeller
  • Tim Booth
  • Andreas Tille
  • Thorsten Alteholz
  • Michael R. Crusoe

External Resources:

Similar packages:

Whole Genome Shotgun and EST Sequence Assembler

The mira genome fragment assembler is a specialised assembler for sequencing projects classified as 'hard' due to high number of similar repeats. For expressed sequence tags (ESTs) transcripts, miraEST is specialised on reconstructing pristine mRNA transcripts while detecting and classifying single nucleotide polymorphisms (SNP) occurring in different variations thereof.

The assembler is routinely used for such various tasks as mutation detection in different cell types, similarity analysis of transcripts between organisms, and pristine assembly of sequences from various sources for oligo design in clinical microarray experiments.

The package provides the following executables: Binaries provided:

 * mira: for assembly of genome sequences
 * miramem: estimating memory needed to assemble projects.
 * mirabait: a "grep" like tool to select reads with kmers up to 256 bases.
 * miraconvert: is a tool to convert, extract and sometimes recalculate all
   kinds of data related to sequence assembly files.

Other Packages Related to mira-assembler

  • depends
  • recommends
  • suggests
  • sug: mira-doc
    documentation for the mira assembler

Download mira-assembler

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 2,173.7 kB6954 kB [list of files]
i386 2,146.3 kB7311 kB [list of files]