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Package: ltrsift (1.0.2-7)

postprocessing and classification of LTR retrotransposons

LTRsift is a graphical desktop tool for semi-automatic postprocessing of de novo predicted LTR retrotransposon annotations, such as the ones generated by LTRharvest and LTRdigest. Its user-friendly interface displays LTR retrotransposon candidates, their putative families and their internal structure in a hierarchical fashion, allowing the user to "sift" through the sometimes large results of de novo prediction software. It also offers customizable filtering and classification functionality.

Other Packages Related to ltrsift

  • depends
  • recommends
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  • dep: libc6 (>= 2.7)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libcairo2 (>= 1.2.4)
    Cairo 2D vector graphics library
  • dep: libgdk-pixbuf2.0-0 (>= 2.22.0)
    GDK Pixbuf library
  • dep: libgenometools0
    versatile genome analysis library
  • dep: libglib2.0-0 (>= 2.35.9)
    GLib library of C routines
  • dep: libgtk2.0-0 (>= 2.18.0)
    GTK+ graphical user interface library
  • dep: libpango-1.0-0 (>= 1.14.0)
    Layout and rendering of internationalized text
  • rec: last-align
    genome-scale comparison of biological sequences
  • rec: ncbi-blast+
    next generation suite of BLAST sequence search tools

Download ltrsift

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 101.4 kB355 kB [list of files]
i386 114.5 kB418 kB [list of files]