[ Source: gubbins ]
Package: gubbins (2.3.1-1)
Links for gubbins
Trisquel Resources:
Download Source Package gubbins:
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Andreas Tille
- Aidan Delaney
External Resources:
- Homepage [sanger-pathogens.github.io]
Similar packages:
phylogenetic analysis of genome sequences
Gubbins supports rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences.
Gubbins (Genealogies Unbiased By recomBinations In Nucleotide Sequences) is an algorithm that iteratively identifies loci containing elevated densities of base substitutions while concurrently constructing a phylogeny based on the putative point mutations outside of these regions. Simulations demonstrate the algorithm generates highly accurate reconstructions under realistic models of short-term bacterial evolution, and can be run in only a few hours on alignments of hundreds of bacterial genome sequences.
Other Packages Related to gubbins
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- dep: fasttree
- phylogenetic trees from alignments of nucleotide or protein sequences
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- dep: libc6 (>= 2.14) [amd64]
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
- dep: libc6 (>= 2.4) [i386]
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-biopython
- Python library for bioinformatics (implemented in Python 3)
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- dep: python3-dendropy
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- dep: python3-nose
- test discovery and running for Python3 unittest
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- dep: python3-reportlab
- ReportLab library to create PDF documents using Python3
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- dep: raxml (>= 8)
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- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
Download gubbins
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| amd64 | 49.3 kB | 197 kB | [list of files] |
| i386 | 50.3 kB | 200 kB | [list of files] |