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Package: glam2 (1064-4)

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glam2

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Download Source Package glam2:

Maintainer:

Original Maintainers:

  • Debian Med Packaging Team (Mail Archive)
  • Steffen Moeller
  • Charles Plessy
  • Andreas Tille

External Resources:

Similar packages:

gapped protein motifs from unaligned sequences

GLAM2 is a software package for finding motifs in sequences, typically amino-acid or nucleotide sequences. A motif is a re-occurring sequence pattern: typical examples are the TATA box and the CAAX prenylation motif. The main innovation of GLAM2 is that it allows insertions and deletions in motifs.

This package includes programs for discovering motifs shared by a set of sequences and finding matches to these motifs in a sequence database, as well as utilities for converting glam2 motifs to standard alignment formats, masking glam2 motifs out of sequences so that weaker motifs can be found, and removing highly similar members of a set of sequences.

The package includes these programs:

 glam2:       discovering motifs shared by a set of sequences;
 glam2scan:   finding matches, in a sequence database, to a motif discovered
              by glam2;
 glam2format: converting glam2 motifs to  standard alignment formats;
 glam2mask:   masking glam2 motifs out of sequences, so that weaker motifs
              can be found;
 glam2-purge: removing highly similar members of a set of sequences.

In this binary package, the fast Fourier algorithm (FFT) was enabled for the glam2 program.

Other Packages Related to glam2

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.14) [amd64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.7) [i386]
  • dep: libfftw3-double3 (>= 3.3.5)
    Library for computing Fast Fourier Transforms - Double precision

Download glam2

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 234.3 kB503 kB [list of files]
i386 236.3 kB506 kB [list of files]