Skip to content
Sections
>> Trisquel >> Packages >> etiona >> science >> giira
etiona  ]
[ Source: giira  ]

Package: giira (0.0.20140625-1)

RNA-Seq driven gene finding incorporating ambiguous reads

GIIRA is a gene prediction method that identifies potential coding regions exclusively based on the mapping of reads from an RNA-Seq experiment. It was foremost designed for prokaryotic gene prediction and is able to resolve genes within the expressed region of an operon. However, it is also applicable to eukaryotes and predicts exon intron structures as well as alternative isoforms.

Other Packages Related to giira

  • depends
  • recommends
  • suggests
  • dep: bowtie2
    ultrafast memory-efficient short read aligner
  • dep: glpk-utils
    linear programming kit - utility files
  • dep: libglpk-java
    Java binding to the GNU Linear Programming Kit
  • dep: tophat
    fast splice junction mapper for RNA-Seq reads

Download giira

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 140.3 kB172 kB [list of files]