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Package: concavity (0.1+dfsg.1-1)

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concavity

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Download Source Package concavity:

Maintainer:

Original Maintainers:

  • Debian Med Packaging Team (Mail Archive)
  • Laszlo Kajan
  • Andreas Tille

External Resources:

Similar packages:

predictor of protein ligand binding sites from structure and conservation

ConCavity predicts protein ligand binding sites by combining evolutionary sequence conservation and 3D structure.

ConCavity takes as input a PDB format protein structure and optionally files that characterize the evolutionary sequence conservation of the chains in the structure file.

The following result files are produced by default:

 * Residue ligand binding predictions for each chain (*.scores).
 * Residue ligand binding predictions in a PDB format file (residue
   scores placed in the temp. factor field, *_residue.pdb).
 * Pocket prediction locations in a DX format file (*.dx).
 * PyMOL script to visualize the predictions (*.pml).

Other Packages Related to concavity

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.14) [amd64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.4) [i386]
  • dep: libgcc1 (>= 1:3.0)
    GCC support library
  • dep: libstdc++6 (>= 4.1.1)
    GNU Standard C++ Library v3

Download concavity

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 291.7 kB588 kB [list of files]
i386 302.4 kB623 kB [list of files]