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Package: cassiopee (1.0.7-1)

index and search tool in genomic sequences

Cassiopee index and search library C implementation. It is a complete rewrite of the ruby Cassiopee gem. It scans an input genomic sequence (dna/rna/protein) and search for a subsequence with exact match or allowing substitutions (Hamming distance) and/or insertion/deletions.

This package contains the cassiopee and cassiopeeknife tools.

Other Packages Related to cassiopee

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.14) [amd64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.4) [i386]
  • dep: libcassie1v5
    library implementating search algorithms
  • dep: libgcc1 (>= 1:3.0)
    GCC support library
  • dep: libgoogle-glog0v5
    library that implements application-level logging.
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3

Download cassiopee

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 12.4 kB53 kB [list of files]
i386 12.6 kB47 kB [list of files]