Package: canu (1.6+dfsg-2)

Links for canu

Trisquel Resources:

Download Source Package canu:

Maintainer:

Debian Med Packaging Team (Mail Archive)

Original Maintainers:

Debian Med Packaging Team (Mail Archive)
Afif Elghraoui

External Resources:

Homepage [canu.readthedocs.org]

Similar packages:

single molecule sequence assembler for genomes

Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II or Oxford Nanopore MinION).

Canu is a hierarchical assembly pipeline which runs in four steps:

 * Detect overlaps in high-noise sequences using MHAP
 * Generate corrected sequence consensus
 * Trim corrected sequences
 * Assemble trimmed corrected sequences

Other Packages Related to canu

depends

recommends

suggests

dep: libc6 (>= 2.14)

GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
dep: libfilesys-df-perl

Module to obtain filesystem disk space information
dep: libgcc1 (>= 1:3.0)

GCC support library
dep: libgomp1 (>= 4.9)

GCC OpenMP (GOMP) support library
dep: libstdc++6 (>= 5.2)

GNU Standard C++ Library v3
dep: mhap (>= 2.1)

locality-sensitive hashing to detect long-read overlaps
dep: perl

Larry Wall's Practical Extraction and Report Language

rec: gnuplot

Command-line driven interactive plotting program.
also a virtual package provided by gnuplot-nox, gnuplot-qt, gnuplot-x11

sug: nanopolish

consensus caller for nanopore sequencing data
sug: pbgenomicconsensus

Pacific Biosciences variant and consensus caller

Download canu

Download for all available architectures
Architecture	Package Size	Installed Size	Files
amd64	1,846.7 kB	11664 kB	[list of files]

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