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[ Source: cain  ]

Package: cain-solvers (1.10+dfsg-2)

solvers for cain

Cain performs stochastic and deterministic simulations of chemical reactions. It can spawn multiple simulation processes to utilize multi-core computers. It stores models, methods, and simulation output (populations and reaction counts) in an XML format. In addition, SBML models can be imported and exported. The models and methods can be read from input files or edited within the program.

The GUI (Graphical User Interface) is written in Python and uses the wxPython toolkit. Most of the solvers are implemented as command line executables, written in C++, which are driven by Cain. This makes it easy to launch batch jobs. It also simplifies the process of adding new solvers. Cain offers a variety of solvers: 

 * Gillespie's direct method.
 * Gillespie's first reaction method.
 * Gibson and Bruck's next reaction method.
 * Tau-leaping.
 * Hybrid direct/tau-leaping.
 * ODE integration.

This package provides the solver libraries

Other Packages Related to cain-solvers

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.14) [amd64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.4) [i386]
  • dep: libeigen3-dev
    lightweight C++ template library for linear algebra
  • dep: libgcc1 (>= 1:4.0)
    GCC support library
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3

Download cain-solvers

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 1,062.2 kB7918 kB [list of files]
i386 764.2 kB7232 kB [list of files]