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Package: bitseq (0.7.5+dfsg-3ubuntu1)

Bayesian Inference of Transcripts from Sequencing Data

BitSeq is an application for inferring expression levels of individual transcripts from sequencing (RNA-Seq) data and estimating differential expression (DE) between conditions. An advantage of this approach is the ability to account for both technical uncertainty and intrinsic biological variance in order to avoid false DE calls. The technical contribution to the uncertainty comes both from finite read-depth and the possibly ambiguous mapping of reads to multiple transcripts.

Other Packages Related to bitseq

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.23)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libgcc1 (>= 1:3.0)
    GCC support library
  • dep: libgomp1 (>= 4.9)
    GCC OpenMP (GOMP) support library
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3
  • dep: python
    interactive high-level object-oriented language (default version)
  • dep: zlib1g (>= 1:1.2.3.3)
    compression library - runtime
  • sug: samtools
    processing sequence alignments in SAM and BAM formats

Download bitseq

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 330.6 kB1819 kB [list of files]
i386 352.9 kB1886 kB [list of files]