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Package: bio-eagle-examples (2.4-1)

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bio-eagle-examples

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Examples for bio-eagle

Eagle estimates haplotype phase either within a genotyped cohort or using a phased reference panel. The basic idea of the Eagle1 algorithm is to harness identity-by-descent among distant relatives—which is pervasive at very large sample sizes but rare among smaller numbers of samples—to rapidly call phase using a fast scoring approach. In contrast, the Eagle2 algorithm analyzes a full probabilistic model similar to the diploid Li-Stephens model used by previous HMM-based methods.

This package provides some example data for eagle.

Other Packages Related to bio-eagle-examples

  • depends
  • recommends
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  • enh: bio-eagle
    Haplotype phasing within a genotyped cohort or using a phased reference panel

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