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Package: anfo (0.98-6)

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anfo

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Download Source Package anfo:

Maintainer:

Original Maintainers:

  • Debian Med Packaging Team (Mail Archive)
  • Tim Booth
  • Andreas Tille

External Resources:

Similar packages:

Short Read Aligner/Mapper from MPG

Anfo is a mapper in the spirit of Soap/Maq/Bowtie, but its implementation takes more after BLAST/BLAT. It's most useful for the alignment of sequencing reads where the DNA sequence is somehow modified (think ancient DNA or bisulphite treatment) and/or there is more divergence between sample and reference than what fast mappers will handle gracefully (say the reference genome is missing and a related species is used instead).

Other Packages Related to anfo

  • depends
  • recommends
  • suggests
  • dep: libanfo0
    Library for Short Read Aligner/Mapper from MPG
  • dep: libc6 (>= 2.14) [amd64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.4) [i386]
  • dep: libelk0
    implementation of Scheme (the Extension Language Kit)
  • dep: libgcc1 (>= 1:3.0) [amd64]
    GCC support library
    dep: libgcc1 (>= 1:4.2) [i386]
  • dep: libpopt0 (>= 1.14)
    lib for parsing cmdline parameters
  • dep: libprotobuf10
    protocol buffers C++ library
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime

Download anfo

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 115.6 kB418 kB [list of files]
i386 120.7 kB408 kB [list of files]